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    LOC4343387 condensin-2 complex subunit H2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343387, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343387
    Gene description
    condensin-2 complex subunit H2
    Locus tag
    OSNPB_070517300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4343387 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (20165593..20170317)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (19938409..19943192)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene DEAD-box ATP-dependent RNA helicase 32-like Neighboring gene 18.8 kDa class V heat shock protein-like Neighboring gene uncharacterized LOC4343388 Neighboring gene AAA-ATPase At5g17760

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in meiotic chromosome condensation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic sister chromatid separation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of condensin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    condensin-2 complex subunit H2
    Names
    OSJNBa0036M16.113
    Os07g0517300
    P0650C03.28

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      20165593..20170317
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790032.3 → XP_015645518.1  condensin-2 complex subunit H2

      UniProtKB/TrEMBL
      B9FXI8
      Conserved Domains (3) summary
      pfam06278
      Location:25 → 133
      CNDH2_N; Condensin II complex subunit CAP-H2 or CNDH2, N-terminal
      pfam16858
      Location:324 → 599
      CNDH2_C; Condensin II complex subunit CAP-H2 or CNDH2, C-term
      pfam16869
      Location:157 → 282
      CNDH2_M; PF16858
    Nucleotide Protein
    Heading Accession and Version

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