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    LOC4348468 probable protein phosphatase 2C 71 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348468, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4348468
    Gene description
    probable protein phosphatase 2C 71
    Locus tag
    OSNPB_100370000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsPP2C71; OsJ_31268; OsJ_030057; OJ1003C07.6
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    Genomic context

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    See LOC4348468 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (12232192..12237002, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (11628105..11634487, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene scarecrow-like transcription factor PAT1 Neighboring gene inositol-3-phosphate synthase 1-like Neighboring gene disease resistance protein RGA5-like Neighboring gene disease resistance protein RGA4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable protein phosphatase 2C 71
    Names
    LOC_Os10g22460
    NP_001410866.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423937.1 → NP_001410866.1  probable protein phosphatase 2C 71

      Status: VALIDATED

      Source sequence(s)
      AK071987, AK100049, AU095538, AU173862, CI772371
      UniProtKB/Swiss-Prot
      A3C435, B9G5E4, Q339D2, Q8S5N3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      12232192..12237002 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q339D2.1 GenPept UniProtKB/Swiss-Prot:Q339D2

    Gene LinkOut

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