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    LOC4331546 pre-mRNA-splicing factor cwf23 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331546, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331546
    Gene description
    pre-mRNA-splicing factor cwf23
    Locus tag
    OSNPB_030136800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4331546 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (2026790..2030008, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2018737..2022092, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable inorganic phosphate transporter 1-7 Neighboring gene uncharacterized LOC4331543 Neighboring gene uncharacterized LOC4331544 Neighboring gene pentatricopeptide repeat-containing protein At4g35130, chloroplastic Neighboring gene putative aconitate hydratase, cytoplasmic Neighboring gene probable protein phosphatase 2C 28

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-splicing factor cwf23
    Names
    Os03g0136800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      2026790..2030008 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775258.3 → XP_015630744.1  pre-mRNA-splicing factor cwf23

      UniProtKB/TrEMBL
      A2XC94, Q0DVC7, Q10S35
      Conserved Domains (2) summary
      pfam00226
      Location:12 → 79
      DnaJ; DnaJ domain
      cl17169
      Location:175 → 233
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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