LOC4333930 phytochrome A-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4333930
Gene description: phytochrome A-like
Locus tag: OSNPB_030719800
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: PHYA; PHY18; B1377B10.8; OsJ_011877
Expression: Ubiquitous expression in flowers (RPKM 29.6), roots before flowering (RPKM 27.7) and 6 other tissues See more
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Genomic context

Location:: chromosome: 3

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	3	NC_089037.1 (30048802..30056761, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (29168187..29176107, complement)

Chromosome 3 - NC_089037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

PhyA role in the anther development and pollen viability.
Title: The Rice Phytochrome Genes, PHYA and PHYB, Have Synergistic Effects on Anther Development and Pollen Viability.
OsPhyA influences flowering time mainly by affecting the expression of OsGI under short day and Ghd7 under long day when phytochrome B is absent.
Title: OsPhyA modulates rice flowering time mainly through OsGI under short days and Ghd7 under long days in the absence of phytochrome B.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables phosphorelay sensor kinase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables photoreceptor activity	IEA Inferred from Electronic Annotation more info	PubMed
enables protein homodimerization activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in detection of visible light	IEA Inferred from Electronic Annotation more info	PubMed
involved_in protein-tetrapyrrole linkage	IEA Inferred from Electronic Annotation more info	PubMed
involved_in red, far-red light phototransduction	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: phytochrome A

Names: LOC_Os03g51030; OAJNBa0031O09.11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.