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    LOC4331149 auxin-responsive protein IAA10-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331149, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4331149
    Gene description
    auxin-responsive protein IAA10-like
    Locus tag
    OSNPB_020817600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    IAA10; OsJ_08880; OJ1136_C12.16-1; OJ1136_C12.16-2
    Expression
    Ubiquitous expression in flowers (RPKM 72.5), leaves before flowering (RPKM 54.6) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (35572023..35574453, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35073369..35075807, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene actin-related protein 2/3 complex subunit 1B Neighboring gene probable voltage-gated potassium channel subunit beta Neighboring gene 3-ketoacyl-CoA thiolase 2, peroxisomal Neighboring gene telomere-binding protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Rice Dwarf Virus P2 Protein Hijacks Auxin Signaling by Directly Targeting the Rice OsIAA10 Protein, Enhancing Viral Infection and Disease Development. Jin L, et al. PLoS Pathog, 2016 Sep. PMID 27606959, Free PMC Article
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The RDV capsid protein P2 binds OsIAA10, blocking the interaction between OsIAA10 and OsTIR1 and inhibiting 26S proteasome-mediated OsIAA10 degradation.
      Title: Rice Dwarf Virus P2 Protein Hijacks Auxin Signaling by Directly Targeting the Rice OsIAA10 Protein, Enhancing Viral Infection and Disease Development.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin-responsive protein IAA10
    Names
    Indoleacetic acid-induced protein 10
    LOC_Os02g57250
    P0643F09.36-1
    P0643F09.36-2
    putative aux/IAA protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402002.1 → NP_001388931.1  auxin-responsive protein IAA10 isoform 1

      Status: VALIDATED

      Source sequence(s)
      CB681315, CI525242, CI580694, CI610975
      UniProtKB/Swiss-Prot
      A2XB18, B7EWI8, Q0DWF2, Q59AA1, Q6K695, Q6K696

    2. NM_001402003.1 → NP_001388932.1  auxin-responsive protein IAA10 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK069892, C98290, CB650722, CI153429
      UniProtKB/Swiss-Prot
      A2XB18, Q59AA1, Q6K695, Q6K696
      UniProtKB/TrEMBL
      B7EH15

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      35572023..35574453 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0DWF2.2 GenPept UniProtKB/Swiss-Prot:Q0DWF2

    Gene LinkOut

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    Research Materials