U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4351330 methylesterase 17 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351330, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4351330
    Gene description
    methylesterase 17
    Locus tag
    OSNPB_120117100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4351330 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (877807..879528)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (853926..855493)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene probable WRKY transcription factor 72 Neighboring gene uncharacterized LOC4351329 Neighboring gene uncharacterized LOC107279793 Neighboring gene methylesterase 17 Neighboring gene mannan endo-1,4-beta-mannosidase 8

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables methyl indole-3-acetate esterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methyl jasmonate esterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methyl salicylate esterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in jasmonic acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in salicylic acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    methylesterase 17
    Names
    Os12g0117100

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      877807..879528
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306355.1 → XP_066162452.1  methylesterase 17 isoform X1

    2. XM_015764680.3 → XP_015620166.1  methylesterase 17 isoform X4

      Conserved Domains (1) summary
      PLN02211
      Location:32 → 209
      PLN02211; methyl indole-3-acetate methyltransferase

    3. XM_066306356.1 → XP_066162453.1  methylesterase 17 isoform X3

    4. XM_015764679.3 → XP_015620165.2  methylesterase 17 isoform X2

      UniProtKB/TrEMBL
      B8BNY2, B9GBJ1, Q2QYJ1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials