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    LOC4328264 AIG2-like protein D [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328264, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328264
    Gene description
    AIG2-like protein D
    Locus tag
    OSNPB_020141000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1679_B08.28
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 8.3), leaves after flowering (RPKM 7.5) and 5 other tissues See more
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    Genomic context

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    See LOC4328264 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (2213385..2220311)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (2205723..2212755)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328263 Neighboring gene uncharacterized LOC107275450 Neighboring gene auxin response factor 5 Neighboring gene L-arabinokinase Neighboring gene uncharacterized LOC4328267

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    AIG2-like protein D
    Names
    Os02g0141000
    avrRpt2-induced protein 2-like
    protein AIG2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409316.1 → NP_001396245.1  AIG2-like protein D

      Status: VALIDATED

      Source sequence(s)
      CI349908, CI439472, CI592636
      UniProtKB/TrEMBL
      A0A0N7KEN6, B8AHF0, Q0E418, Q6Z2W4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      2213385..2220311
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771568.3 → XP_015627054.1  AIG2-like protein D isoform X1

      UniProtKB/TrEMBL
      A0A0N7KEN6, B8AHF0, Q0E418, Q6Z2W4
      Conserved Domains (1) summary
      pfam06094
      Location:10 → 122
      GGACT; Gamma-glutamyl cyclotransferase, AIG2-like
    Nucleotide Protein
    Heading Accession and Version

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