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    LOC4345856 dicarboxylate transporter 2.1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345856, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345856
    Gene description
    dicarboxylate transporter 2.1, chloroplastic
    Locus tag
    OSNPB_080481800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1111_H02.2
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    Genomic context

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    See LOC4345856 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (23960234..23964942, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (23820326..23825129, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein HOX20-like Neighboring gene uncharacterized LOC4345855 Neighboring gene probable bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic Neighboring gene uncharacterized LOC4345857

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dicarboxylate transporter 2.1, chloroplastic
    Names
    OSJNBb0092C08.31
    Os08g0481800
    putative glutamate/malate translocator

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      23960234..23964942 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795169.3 → XP_015650655.1  dicarboxylate transporter 2.1, chloroplastic

      UniProtKB/TrEMBL
      A3BU69, Q6Z229
      Conserved Domains (1) summary
      cl21473
      Location:89 → 554
      ArsB_NhaD_permease; Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices ...
    Nucleotide Protein
    Heading Accession and Version

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