LOC4332491 beta-taxilin [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4332491
Gene description: beta-taxilin
Locus tag: OSNPB_030288600
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Ubiquitous expression in flower buds (RPKM 18.9), flowers (RPKM 17.5) and 6 other tissues See more
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Genomic context

Location:: chromosome: 3

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	3	NC_089037.1 (10037860..10041090)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (9986928..9990384)

Chromosome 3 - NC_089037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables syntaxin binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: beta-taxilin

Names: Os03g0288600; muscle derived-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001417567.1 → NP_001404496.1 beta-taxilin isoform 1

Status: VALIDATED

Source sequence(s)

AK101532, CI309899

UniProtKB/TrEMBL

A0A0P0VWB4, B8Q892, Q0DST8, Q84VE3
NM_001417569.1 → NP_001404498.1 beta-taxilin isoform 2

Status: VALIDATED

Source sequence(s)

AK065540, AK101532, CI309899

UniProtKB/TrEMBL

A0A0P0VWB4, B8ALK6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089037.1 Reference ASM3414082v1 Primary Assembly

Range

10037860..10041090

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015775664.3 → XP_015631150.1 beta-taxilin isoform X1

UniProtKB/TrEMBL

A0A0P0VWB4

Conserved Domains (2) summary

pfam09728
Location:155 → 408

Taxilin; Myosin-like coiled-coil protein

cl20817
Location:195 → 298

GBP_C; Guanylate-binding protein, C-terminal domain
XM_015775667.3 → XP_015631153.1 beta-taxilin isoform X2

UniProtKB/TrEMBL

A0A0P0VWB4, Q10MZ5

Conserved Domains (2) summary

pfam09728
Location:149 → 402

Taxilin; Myosin-like coiled-coil protein

cl20817
Location:189 → 292

GBP_C; Guanylate-binding protein, C-terminal domain