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    LOC4346207 uncharacterized LOC4346207 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346207, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4346207
    Gene description
    uncharacterized LOC4346207
    Locus tag
    OSNPB_080543600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0623F08.8; Os08g0543500; OJ1521_G02.33
    Expression
    Ubiquitous expression in flower buds (RPKM 14.5), roots before flowering (RPKM 13.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27357269..27363867, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27210323..27217043, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene putrescine hydroxycinnamoyltransferase 1-like Neighboring gene putative disease resistance protein RGA3 Neighboring gene transcription factor MYC2 Neighboring gene uncharacterized LOC112936215

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4346207
    Names
    Os08g0543600

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      27357269..27363867 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794594.3 → XP_015650080.1  uncharacterized protein LOC4346207 isoform X2

      UniProtKB/TrEMBL
      B8B9G1
      Conserved Domains (1) summary
      TIGR02168
      Location:78 → 313
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. XM_015794593.3 → XP_015650079.1  uncharacterized protein LOC4346207 isoform X1

      UniProtKB/TrEMBL
      B8B9G1, Q0J3Z9, Q6ZBI5
      Conserved Domains (1) summary
      TIGR02168
      Location:78 → 313
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    RNA

    1. XR_010734247.1 RNA Sequence

    2. XR_003238276.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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