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    LOC4341584 uncharacterized LOC4341584 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341584, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4341584
    Gene description
    uncharacterized LOC4341584
    Locus tag
    OSNPB_060632200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341584 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (26453679..26457874, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25590291..25594483, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene uncharacterized LOC9269820 Neighboring gene cytochrome P450 89A2-like Neighboring gene uncharacterized LOC107278631

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tryptophan synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tryptophan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4341584
    Names
    Os06g0632200
    P0505A04.10-1
    P0505A04.10-2
    putative Tryptophan synthase beta chain
    tryptophan synthase beta chain 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      26453679..26457874 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788507.2 → XP_015643993.1  uncharacterized protein LOC4341584 isoform X3

      UniProtKB/TrEMBL
      A0A0P0WZB3, A2YFA8, A3BDS5, Q67VM2
      Conserved Domains (1) summary
      PRK12391
      Location:43 → 463
      PRK12391; TrpB-like pyridoxal phosphate-dependent enzyme

    2. XM_015788506.2 → XP_015643992.1  uncharacterized protein LOC4341584 isoform X2

      UniProtKB/TrEMBL
      A2YFA8, A3BDS5
      Conserved Domains (1) summary
      PRK12391
      Location:44 → 464
      PRK12391; TrpB-like pyridoxal phosphate-dependent enzyme

    3. XM_015788505.2 → XP_015643991.1  uncharacterized protein LOC4341584 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WYX1, A2YFA8, A3BDS5, Q67VM1
      Conserved Domains (1) summary
      PRK12391
      Location:45 → 465
      PRK12391; TrpB-like pyridoxal phosphate-dependent enzyme
    Nucleotide Protein
    Heading Accession and Version

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