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    LOC4345975 uncharacterized LOC4345975 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345975, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345975
    Gene description
    uncharacterized LOC4345975
    Locus tag
    OSNPB_080505200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1134_H03.19
    Expression
    Biased expression in flowers (RPKM 52.8), flower buds (RPKM 20.0) and 3 other tissues See more
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    Genomic context

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    See LOC4345975 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (25131840..25136241)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24986074..24990486)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9272419 Neighboring gene uncharacterized LOC136351356 Neighboring gene large ribosomal subunit protein eL31 Neighboring gene uncharacterized LOC136351357

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345975
    Names
    OSJNBa0025J22.9
    Os08g0505200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      25131840..25136241
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794886.3 → XP_015650372.1  uncharacterized protein LOC4345975

      UniProtKB/TrEMBL
      A0A0P0XHF7, B8BCA1, Q6Z3T4, Q6ZK78
      Conserved Domains (1) summary
      cl03379
      Location:462 → 557
      Myo5-like_CBD; Cargo binding domain of myosin 5 and similar proteins

    2. XM_015794888.3 → XP_015650374.1  uncharacterized protein LOC4345975

      UniProtKB/TrEMBL
      A0A0P0XHF7, B8BCA1, Q6Z3T4, Q6ZK78
      Conserved Domains (1) summary
      cl03379
      Location:462 → 557
      Myo5-like_CBD; Cargo binding domain of myosin 5 and similar proteins

    3. XM_015794889.3 → XP_015650375.1  uncharacterized protein LOC4345975

      UniProtKB/TrEMBL
      A0A0P0XHF7, B8BCA1, Q6Z3T4, Q6ZK78
      Conserved Domains (1) summary
      cl03379
      Location:462 → 557
      Myo5-like_CBD; Cargo binding domain of myosin 5 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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