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    LOC4329020 casein kinase 1-like protein 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329020, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4329020
    Gene description
    casein kinase 1-like protein 3
    Locus tag
    OSNPB_020280400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 32.5), roots after flowering (RPKM 21.1) and 6 other tissues See more
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    Genomic context

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    See LOC4329020 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (10400187..10407256)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (10370975..10378191)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 26 Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 26 Neighboring gene probable lactoylglutathione lyase, chloroplastic Neighboring gene protein SRG1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-serine phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    casein kinase 1-like protein 3
    Names
    Os02g0280400
    P0669G10.5-1
    putative protein kinase ADK1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      10400187..10407256
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771212.3 → XP_015626698.1  casein kinase 1-like protein 3

      UniProtKB/TrEMBL
      A0A0P0VHL5, A2X3G5, A3A5J8, Q6ES24
      Conserved Domains (1) summary
      cl21453
      Location:8 → 282
      PKc_like; Protein Kinases, catalytic domain

    2. XM_015771213.3 → XP_015626699.1  casein kinase 1-like protein 3

      UniProtKB/TrEMBL
      A0A0P0VHL5, A2X3G5, A3A5J8, Q6ES24
      Conserved Domains (1) summary
      cl21453
      Location:8 → 282
      PKc_like; Protein Kinases, catalytic domain

    3. XM_015771214.3 → XP_015626700.1  casein kinase 1-like protein 3

      UniProtKB/TrEMBL
      A0A0P0VHL5, A2X3G5, A3A5J8, Q6ES24
      Conserved Domains (1) summary
      cl21453
      Location:8 → 282
      PKc_like; Protein Kinases, catalytic domain

    4. XM_066308078.1 → XP_066164175.1  casein kinase 1-like protein 3

      UniProtKB/TrEMBL
      A0A0P0VHL5, A2X3G5, A3A5J8, Q6ES24
    Nucleotide Protein
    Heading Accession and Version

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