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    LOC4334169 UDP-glucose 6-dehydrogenase 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334169, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4334169
    Gene description
    UDP-glucose 6-dehydrogenase 3-like
    Locus tag
    OSNPB_030757900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    UGD3; Os-UGD3; OsJ_12653
    Expression
    Broad expression in roots before flowering (RPKM 700.3), leaves after flowering (RPKM 141.7) and 4 other tissues See more
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    Genomic context

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    See LOC4334169 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (32286219..32288809)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (31315795..31318378)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277532 Neighboring gene UDP-glycosyltransferase 83A1 Neighboring gene UDP-glycosyltransferase 83A1 Neighboring gene probable WRKY transcription factor 57 Neighboring gene alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables UDP-glucose 6-dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycosaminoglycan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uDP-glucose 6-dehydrogenase 3
    Names
    LOC_Os03g55070
    OSJNBa0040E01.8
    UDP-Glc dehydrogenase 3
    UDP-GlcDH 3
    UDP-glucose 6-dehydrogenase 3
    UDPGDH 3
    NP_001405648.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418719.1 → NP_001405648.1  uDP-glucose 6-dehydrogenase 3

      Status: VALIDATED

      Source sequence(s)
      AU031349, AU070753, AU088692, AU088693, AU094110, CI055301, CI256727
      UniProtKB/Swiss-Prot
      A0A0P0W388, Q9AUV6
      UniProtKB/TrEMBL
      A0A0B4U1W3, B8AK72

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      32286219..32288809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9AUV6.1 GenPept UniProtKB/Swiss-Prot:Q9AUV6

    Gene LinkOut

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