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    LOC4334917 arginine decarboxylase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334917, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4334917
    Gene description
    arginine decarboxylase 2-like
    Locus tag
    OSNPB_040107600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ADC2; ARGDC2; OsADC2; OsJ_13525
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    Genomic context

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    See LOC4334917 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (467092..470638)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (463662..467284)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene glyoxylate/hydroxypyruvate reductase HPR3 Neighboring gene glyoxylate/hydroxypyruvate reductase HPR3 Neighboring gene glyoxylate/hydroxypyruvate reductase HPR3 Neighboring gene senescence-specific cysteine protease SAG39 Neighboring gene heat shock protein 82

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular characterization of the Arginine decarboxylase gene family in rice. Peremarti A, et al. Transgenic Res, 2010 Oct. PMID 20082138
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables arginine decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in arginine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spermidine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    arginine decarboxylase 2
    Names
    LOC_Os04g01690
    OSJNBb0085F13.14
    NP_001389259.1
    NP_001389260.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402330.1 → NP_001389259.1  arginine decarboxylase 2

      Status: VALIDATED

      Source sequence(s)
      AK121110, CI130461, CI244511, CI652709
      UniProtKB/Swiss-Prot
      A0A0P0W684, C0LN13, Q7XRA1
      UniProtKB/TrEMBL
      A0A140E396, A2XPL5, Q01HV9

    2. NM_001402331.1 → NP_001389260.1  arginine decarboxylase 2

      Status: VALIDATED

      Source sequence(s)
      AK121110, CI130461, CI244511, CI663449
      UniProtKB/Swiss-Prot
      A0A0P0W684, C0LN13, Q7XRA1
      UniProtKB/TrEMBL
      A0A140E396, A2XPL5, Q01HV9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      467092..470638
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XRA1.2 GenPept UniProtKB/Swiss-Prot:Q7XRA1

    Gene LinkOut

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