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    LOC4330504 probable L-type lectin-domain containing receptor kinase S.5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330504, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4330504
    Gene description
    probable L-type lectin-domain containing receptor kinase S.5
    Locus tag
    OSNPB_020712700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    lrk1; OJ1038_A06.33
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    Genomic context

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    See LOC4330504 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30011114..30019872, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29519571..29524089, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355288 Neighboring gene galactan beta-1,4-galactosyltransferase GALS1 Neighboring gene probable L-type lectin-domain containing receptor kinase S.5 Neighboring gene LOB domain-containing protein 12 Neighboring gene uncharacterized LOC107278218

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-Wide Association Study Unravels LRK1 as a Dark Respiration Regulator in Rice (Oryza sativa L.). Qu M, et al. Int J Mol Sci, 2020 Jul 13. PMID 32668582, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Genome-Wide Association Study Unravels LRK1 as a Dark Respiration Regulator in Rice (Oryza sativa L.).
      Title: Genome-Wide Association Study Unravels LRK1 as a Dark Respiration Regulator in Rice (Oryza sativa L.).
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable L-type lectin-domain containing receptor kinase S.5
    Names
    Os02g0712700
    Os02g0712800
    lectin receptor kinase 1
    putative lectin-like protein kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      30011114..30019872 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307415.1 → XP_066163512.1  probable L-type lectin-domain containing receptor kinase S.5

      UniProtKB/TrEMBL
      A0A0P0VNT4, Q0DY65

    2. XM_066307414.1 → XP_066163511.1  probable L-type lectin-domain containing receptor kinase S.5

      UniProtKB/TrEMBL
      A0A0P0VNT4, Q0DY65

    3. XM_066307413.1 → XP_066163510.1  probable L-type lectin-domain containing receptor kinase S.5

      UniProtKB/TrEMBL
      A0A0P0VNT4, Q0DY65

    4. XM_026022852.2 → XP_025878637.1  probable L-type lectin-domain containing receptor kinase S.5

      UniProtKB/TrEMBL
      A0A0P0VNT4, Q0DY65, Q6BDD3, Q6ZIQ8
      Conserved Domains (2) summary
      cd06899
      Location:50 → 308
      lectin_legume_LecRK_Arcelin_ConA; legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor
      cl21453
      Location:398 → 676
      PKc_like; Protein Kinases, catalytic domain

    5. XM_026022851.2 → XP_025878636.1  probable L-type lectin-domain containing receptor kinase S.5

      UniProtKB/TrEMBL
      A0A0P0VNT4, Q0DY65, Q6BDD3, Q6ZIQ8
      Conserved Domains (2) summary
      cd06899
      Location:50 → 308
      lectin_legume_LecRK_Arcelin_ConA; legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor
      cl21453
      Location:398 → 676
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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