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    LOC4341183 disease resistance protein RGA5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341183, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4341183
    Gene description
    disease resistance protein RGA5-like
    Locus tag
    OSNPB_060524900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RGH1A-like; OJ1616_B03.30-1
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    Genomic context

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    See LOC4341183 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (20290185..20294454)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (19434755..19439061)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein trichome birefringence-like 24 Neighboring gene uncharacterized LOC4341181 Neighboring gene UPF0481 protein At3g47200 Neighboring gene disease resistance protein RGA5-like Neighboring gene uncharacterized LOC4341184 Neighboring gene uncharacterized LOC9272382 Neighboring gene transcription factor SPEECHLESS

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RGA5-like
    Names
    Os06g0524900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      20290185..20294454
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786311.3 → XP_015641797.1  disease resistance protein RGA5-like

      UniProtKB/TrEMBL
      A0A0P0WXA4, Q654T3
      Conserved Domains (2) summary
      cd14798
      Location:7 → 134
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      pfam00931
      Location:199 → 419
      NB-ARC; NB-ARC domain
    Nucleotide Protein
    Heading Accession and Version

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