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    LOC4335529 alpha-copaene synthase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335529, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4335529
    Gene description
    alpha-copaene synthase
    Locus tag
    OSNPB_040345400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ZIS2
    Expression
    Biased expression in leaves before flowering (RPKM 67.9), leaves after flowering (RPKM 45.1) and 3 other tissues See more
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    Genomic context

    See LOC4335529 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (16766866..16771850)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (16419927..16424941)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene tau-cadinol synthase Neighboring gene tau-cadinol synthase-like Neighboring gene uncharacterized LOC107278525 Neighboring gene uncharacterized LOC112938707

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    alpha-copaene synthase
    Names
    Os04g0345400
    alpha-humulene synthase
    putative zingiberene synthase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      16766866..16771850
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778784.3XP_015634270.1  alpha-copaene synthase isoform X1

      UniProtKB/TrEMBL
      B8ASG6, B9FEJ3, Q01KN7
      Conserved Domains (1) summary
      cd00684
      Location:54582
      Terpene_cyclase_plant_C1; Plant Terpene Cyclases, Class 1
    2. XM_015778785.3XP_015634271.1  alpha-copaene synthase isoform X2

      UniProtKB/TrEMBL
      B8ASG6, B9FEJ3, Q01KN7
      Conserved Domains (1) summary
      cd00684
      Location:54572
      Terpene_cyclase_plant_C1; Plant Terpene Cyclases, Class 1