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    LOC4340619 O-fucosyltransferase 15 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340619, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340619
    Gene description
    O-fucosyltransferase 15
    Locus tag
    OSNPB_060239600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 6.3), flower buds (RPKM 6.3) and 6 other tissues See more
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    Genomic context

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    See LOC4340619 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (7422062..7427451)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (7253868..7259301)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 5.8 Neighboring gene protein NRT1/ PTR FAMILY 5.8 Neighboring gene uncharacterized LOC4340620 Neighboring gene uncharacterized LOC9270301

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    O-fucosyltransferase 15
    Names
    OSJNBa0052G07.27
    Os06g0239600
    putative auxin-independent growth promoter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      7422062..7427451
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785433.3 → XP_015640919.1  O-fucosyltransferase 15 isoform X1

      UniProtKB/TrEMBL
      Q67VE2
      Conserved Domains (1) summary
      cd11299
      Location:164 → 525
      O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily

    2. XM_015785435.3 → XP_015640921.1  O-fucosyltransferase 15 isoform X2

      Conserved Domains (1) summary
      cd11299
      Location:20 → 381
      O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily

    3. XM_015785434.3 → XP_015640920.1  O-fucosyltransferase 15 isoform X3

      Conserved Domains (2) summary
      cd11299
      Location:53 → 414
      O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
      pfam10250
      Location:56 → 419
      O-FucT; GDP-fucose protein O-fucosyltransferase

    4. XM_015785436.3 → XP_015640922.1  O-fucosyltransferase 15 isoform X2

      Conserved Domains (1) summary
      cd11299
      Location:20 → 381
      O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
    Nucleotide Protein
    Heading Accession and Version

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