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    LOC4348989 uncharacterized LOC4348989 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348989, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348989
    Gene description
    uncharacterized LOC4348989
    Locus tag
    OSNPB_100493800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4348989 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (19438646..19441633)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (18747249..18750253)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene protein Rf1, mitochondrial-like Neighboring gene alpha-galactosidase-like Neighboring gene WAT1-related protein At3g02690, chloroplastic Neighboring gene uncharacterized LOC4348991

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in snRNA transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in snRNA transcription by RNA polymerase III IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of snRNA-activating protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4348989
    Names
    Os10g0493800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      19438646..19441633
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758083.3 → XP_015613569.1  uncharacterized protein LOC4348989

      UniProtKB/TrEMBL
      A3C622, Q8LNT0
      Conserved Domains (1) summary
      pfam09808
      Location:6 → 201
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

    2. XM_026020985.2 → XP_025876770.1  uncharacterized protein LOC4348989

      UniProtKB/TrEMBL
      A3C622, Q8LNT0
      Conserved Domains (1) summary
      pfam09808
      Location:6 → 201
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

    3. XM_015758082.3 → XP_015613568.1  uncharacterized protein LOC4348989

      UniProtKB/TrEMBL
      A3C622, Q8LNT0
      Conserved Domains (1) summary
      pfam09808
      Location:6 → 201
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43
    Nucleotide Protein
    Heading Accession and Version

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