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    LOC4329365 polyadenylate-binding protein-interacting protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329365, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4329365
    Gene description
    polyadenylate-binding protein-interacting protein 4
    Locus tag
    OSNPB_020480900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 39.9), roots before flowering (RPKM 35.4) and 6 other tissues See more
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    Genomic context

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    See LOC4329365 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (16996536..17004893, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (16537302..16545695, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene calcineurin B-like protein 3 Neighboring gene uncharacterized LOC136355427 Neighboring gene calcineurin B-like protein 3 Neighboring gene uncharacterized LOC4329366 Neighboring gene uncharacterized LOC107279998

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in stress granule assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyadenylate-binding protein-interacting protein 4
    Names
    OSJNBa0091C16.3-1
    Os02g0480900
    P0519B12.23-1
    putative Poly(A)-binding protein binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      16996536..17004893 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771313.3 → XP_015626799.1  polyadenylate-binding protein-interacting protein 4 isoform X2

      UniProtKB/TrEMBL
      B9F005, Q0E174, Q6K2L9
      Conserved Domains (5) summary
      pfam06741
      Location:216 → 280
      LsmAD; LsmAD domain
      pfam07145
      Location:488 → 503
      PAM2; Ataxin-2 C-terminal region
      pfam07777
      Location:501 → 580
      MFMR; G-box binding protein MFMR
      pfam12868
      Location:508 → 574
      DUF3824; Domain of unknwon function (DUF3824)
      pfam14438
      Location:61 → 138
      SM-ATX; Ataxin 2 SM domain

    2. XM_015771312.3 → XP_015626798.1  polyadenylate-binding protein-interacting protein 4 isoform X1

      UniProtKB/TrEMBL
      B9F005
      Conserved Domains (5) summary
      pfam06741
      Location:216 → 280
      LsmAD; LsmAD domain
      pfam07145
      Location:488 → 503
      PAM2; Ataxin-2 C-terminal region
      pfam07777
      Location:501 → 582
      MFMR; G-box binding protein MFMR
      pfam12868
      Location:508 → 576
      DUF3824; Domain of unknwon function (DUF3824)
      pfam14438
      Location:61 → 138
      SM-ATX; Ataxin 2 SM domain
    Nucleotide Protein
    Heading Accession and Version

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