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    LOC4335566 G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335566, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335566
    Gene description
    G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130
    Locus tag
    OSNPB_040356600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 4.0), leaves after flowering (RPKM 1.3) and 2 other tissues See more
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    Genomic context

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    See LOC4335566 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (17392640..17395442)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (17044260..17046958)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC136356203 Neighboring gene uncharacterized LOC9269253 Neighboring gene uncharacterized LOC4335569 Neighboring gene uncharacterized LOC107280771

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in recognition of pollen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130
    Names
    Os04g0356600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      17392640..17395442
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780541.3 → XP_015636027.1  G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 isoform X2

      UniProtKB/TrEMBL
      A0A0P0W9H2, A3ASR4, Q7XSF1
      Conserved Domains (6) summary
      smart00108
      Location:32 → 167
      B_lectin; Bulb-type mannose-specific lectin
      pfam00069
      Location:520 → 788
      Pkinase; Protein kinase domain
      pfam00954
      Location:259 → 340
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:84 → 195
      B_lectin; D-mannose binding lectin
      pfam08276
      Location:368 → 428
      PAN_2; PAN-like domain
      cl21453
      Location:525 → 793
      PKc_like; Protein Kinases, catalytic domain

    2. XM_015780542.3 → XP_015636028.1  G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 isoform X1

      UniProtKB/TrEMBL
      A0A0P0W9H2, Q0JDY0
      Conserved Domains (5) summary
      pfam00069
      Location:414 → 682
      Pkinase; Protein kinase domain
      pfam00954
      Location:153 → 234
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:1 → 89
      B_lectin; D-mannose binding lectin
      pfam08276
      Location:262 → 322
      PAN_2; PAN-like domain
      cl21453
      Location:419 → 687
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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