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    LOC4329703 pentatricopeptide repeat-containing protein At1g09900 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329703, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4329703
    Gene description
    pentatricopeptide repeat-containing protein At1g09900
    Locus tag
    OSNPB_020565400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    wsl4
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    Genomic context

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    See LOC4329703 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21951983..21955964)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (21470870..21475658)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable nucleoside diphosphate kinase 5 Neighboring gene signal peptidase complex subunit 2 Neighboring gene probable protein kinase At2g41970 Neighboring gene homeobox-leucine zipper protein HOX7-like Neighboring gene uncharacterized LOC4329708

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. WHITE STRIPE LEAF4 Encodes a Novel P-Type PPR Protein Required for Chloroplast Biogenesis during Early Leaf Development. Wang Y, et al. Front Plant Sci, 2017. PMID 28694820, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g09900
    Names
    Os02g0565400
    P0020C11.29-1
    putative pentatricopeptide (PPR) repeat-containing protein
    white stripe leaf4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      21951983..21955964
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771889.3 → XP_015627375.1  pentatricopeptide repeat-containing protein At1g09900

      UniProtKB/TrEMBL
      A0A0P0VKP8, Q6Z7E0
      Conserved Domains (3) summary
      PLN03218
      Location:78 → 487
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:335 → 362
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:471 → 519
      PPR_2; PPR repeat family

    2. XM_015771891.3 → XP_015627377.1  pentatricopeptide repeat-containing protein At1g09900

      UniProtKB/TrEMBL
      A0A0P0VKP8, Q6Z7E0
      Conserved Domains (3) summary
      PLN03218
      Location:78 → 487
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:335 → 362
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:471 → 519
      PPR_2; PPR repeat family

    3. XM_015771892.3 → XP_015627378.1  pentatricopeptide repeat-containing protein At1g09900

      UniProtKB/TrEMBL
      A0A0P0VKP8, Q6Z7E0
      Conserved Domains (3) summary
      PLN03218
      Location:78 → 487
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:335 → 362
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:471 → 519
      PPR_2; PPR repeat family

    4. XM_015771887.3 → XP_015627373.1  pentatricopeptide repeat-containing protein At1g09900

      UniProtKB/TrEMBL
      A0A0P0VKP8, Q6Z7E0
      Conserved Domains (3) summary
      PLN03218
      Location:78 → 487
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:335 → 362
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:471 → 519
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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