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    LOC4340625 G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340625, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340625
    Gene description
    G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5
    Locus tag
    OSNPB_060241100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 12.9), leaves after flowering (RPKM 0.9) and 2 other tissues See more
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    Genomic context

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    See LOC4340625 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (7494100..7496581, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (7325223..7327514, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene acetylserotonin O-methyltransferase 1-like Neighboring gene benzoate O-methyltransferase Neighboring gene LRR receptor-like serine/threonine-protein kinase SIK1 Neighboring gene uncharacterized LOC136356790

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5
    Names
    OSJNBa0001B11.12
    Os06g0241100
    S-receptor kinase PK3 precursor-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      7494100..7496581 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786527.3 → XP_015642013.1  G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5

      UniProtKB/TrEMBL
      C7J543, Q0DD92, Q67VH6
      Conserved Domains (1) summary
      cl21453
      Location:114 → 387
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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