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    LOC4329368 5'-3' exoribonuclease 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329368, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4329368
    Gene description
    5'-3' exoribonuclease 2
    Locus tag
    OSNPB_020481900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 9.8), roots before flowering (RPKM 8.2) and 5 other tissues See more
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    Genomic context

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    See LOC4329368 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (17077855..17094421)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (16617314..16633950)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279998 Neighboring gene uncharacterized LOC4329367 Neighboring gene ornithine decarboxylase-like Neighboring gene fasciclin-like arabinogalactan protein 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5'-3' RNA exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleobase-containing compound metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    5'-3' exoribonuclease 2; 5'-3' exoribonuclease 3; 5'-3' exoribonuclease 4
    Names
    OSJNBa0091C16.23-1
    OSJNBa0091C16.23-2
    Os02g0481900
    putative 5'-3' exoribonuclease

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      17077855..17094421
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307738.1 → XP_066163835.1  5'-3' exoribonuclease 2 isoform X5

    2. XM_026023518.2 → XP_025879303.1  5'-3' exoribonuclease 4 isoform X1

      Conserved Domains (1) summary
      cl27292
      Location:114 → 634
      XRN_N; XRN 5'-3' exonuclease N-terminus

    3. XM_066307736.1 → XP_066163833.1  5'-3' exoribonuclease 4 isoform X2

    4. XM_026023521.2 → XP_025879306.1  5'-3' exoribonuclease 3 isoform X3

      Conserved Domains (1) summary
      cl27292
      Location:1 → 610
      XRN_N; XRN 5'-3' exonuclease N-terminus

    5. XM_066307737.1 → XP_066163834.1  5'-3' exoribonuclease 2 isoform X4

    6. XM_066307739.1 → XP_066163836.1  5'-3' exoribonuclease 2 isoform X6

    7. XM_015771485.3 → XP_015626971.1  5'-3' exoribonuclease 2 isoform X7

      UniProtKB/TrEMBL
      A0A0P0VJ34, B8AHX3, Q6K2K4
      Conserved Domains (2) summary
      COG5049
      Location:1 → 669
      XRN1; 5'-3' exonuclease [Replication, recombination and repair]
      pfam03159
      Location:1 → 228
      XRN_N; XRN 5'-3' exonuclease N-terminus

    8. XM_026023525.2 → XP_025879310.2  5'-3' exoribonuclease 4 isoform X8

    Nucleotide Protein
    Heading Accession and Version

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