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    LOC4349257 uncharacterized LOC4349257 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349257, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349257
    Gene description
    uncharacterized LOC4349257
    Locus tag
    OSNPB_100540900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 12.4), flower buds (RPKM 11.3) and 6 other tissues See more
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    Genomic context

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    See LOC4349257 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (21797377..21801167)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (21105092..21108947)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4349256 Neighboring gene uncharacterized LOC136353768 Neighboring gene MLO-like protein 9 Neighboring gene probable protein phosphatase 2C 47 Neighboring gene transfer RNA lysine (anticodon CUU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4349257
    Names
    Os10g0540900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      21797377..21801167
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759230.3 → XP_015614716.1  uncharacterized protein LOC4349257 isoform X1

      Conserved Domains (1) summary
      pfam12274
      Location:289 → 378
      DUF3615; Protein of unknown function (DUF3615)

    2. XM_015759231.3 → XP_015614717.1  uncharacterized protein LOC4349257 isoform X2

      Conserved Domains (1) summary
      pfam12274
      Location:285 → 377
      DUF3615; Protein of unknown function (DUF3615)

    3. XM_015759232.3 → XP_015614718.1  uncharacterized protein LOC4349257 isoform X3

      UniProtKB/TrEMBL
      B9G6T4, Q336W6
      Conserved Domains (1) summary
      pfam12274
      Location:264 → 356
      DUF3615; Protein of unknown function (DUF3615)
    Nucleotide Protein
    Heading Accession and Version

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