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    LOC4332165 uncharacterized LOC4332165 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332165, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4332165
    Gene description
    uncharacterized LOC4332165
    Locus tag
    OSNPB_030233800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 21.4), flower buds (RPKM 8.5) and 3 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (7136932..7140605)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (7088192..7092194)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase ARI2 Neighboring gene uncharacterized LOC112938283 Neighboring gene uncharacterized LOC107276200 Neighboring gene uncharacterized LOC9269238 Neighboring gene non-symbiotic hemoglobin 1-like Neighboring gene non-symbiotic hemoglobin 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4332165
    Names
    Os03g0233800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      7136932..7140605
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024203.2 → XP_025879988.1  uncharacterized protein LOC4332165 isoform X1

      UniProtKB/TrEMBL
      Q0DTP9, Q10PH6
      Conserved Domains (2) summary
      pfam04784
      Location:398 → 526
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:52 → 130
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

    2. XM_026024205.2 → XP_025879990.1  uncharacterized protein LOC4332165 isoform X2

      UniProtKB/TrEMBL
      Q0DTP9, Q10PH6
      Conserved Domains (2) summary
      pfam04784
      Location:341 → 475
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:10 → 81
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1
    Nucleotide Protein
    Heading Accession and Version

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