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    LOC4347158 respiratory burst oxidase homolog protein E [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347158, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347158
    Gene description
    respiratory burst oxidase homolog protein E
    Locus tag
    OSNPB_090438000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1328_D07.24-1; OJ1328_D07.24-2
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    Genomic context

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    See LOC4347158 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (20566142..20577087)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (16186269..16197221)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene uncharacterized LOC4347157 Neighboring gene uncharacterized LOC4347159 Neighboring gene uncharacterized LOC107278859

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD(P)H oxidase H2O2-forming activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    respiratory burst oxidase homolog protein E
    Names
    Os09g0438000
    P0556H01.7-1
    P0556H01.7-2
    putative respiratory burst oxidase protein E

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      20566142..20577087
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756954.3 → XP_015612440.1  respiratory burst oxidase homolog protein E

      UniProtKB/TrEMBL
      A0A0P0XNE4, B8BCH6, Q69LJ7, Q69QE0
      Conserved Domains (6) summary
      cd06186
      Location:689 → 1007
      NOX_Duox_like_FAD_NADP; NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX ...
      cd00051
      Location:259 → 304
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam08030
      Location:807 → 989
      NAD_binding_6; Ferric reductase NAD binding domain
      pfam01794
      Location:479 → 642
      Ferric_reduct; Ferric reductase like transmembrane component
      pfam08414
      Location:177 → 278
      NADPH_Ox; Respiratory burst NADPH oxidase
      pfam13499
      Location:277 → 348
      EF-hand_7; EF-hand domain pair
    Nucleotide Protein
    Heading Accession and Version

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