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    LOC4331492 PIGF/3-ketodihydrosphingosine reductase fusion protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331492, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4331492
    Gene description
    PIGF/3-ketodihydrosphingosine reductase fusion protein
    Locus tag
    OSNPB_030129000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PIGF
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    Genomic context

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    See LOC4331492 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (1649475..1653004)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (1641562..1645169)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene calcium-dependent protein kinase 7-like Neighboring gene uncharacterized LOC4331491 Neighboring gene monosaccharide-sensing protein 2 Neighboring gene MLO protein homolog 1-like Neighboring gene exosome complex exonuclease RRP44 homolog A Neighboring gene glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization of phosphatidylinositol-glycan biosynthesis protein class F gene in rice. Lee DH, et al. DNA Seq, 2008 Jun. PMID 17852346
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in GPI anchor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PIGF/3-ketodihydrosphingosine reductase fusion protein
    Names
    Os03g0129000
    phosphatidylinositol glycan synthesis class F protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      1649475..1653004
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776006.3 → XP_015631492.1  PIGF/3-ketodihydrosphingosine reductase fusion protein isoform X1

      UniProtKB/TrEMBL
      Q0PGJ2
      Conserved Domains (1) summary
      pfam06699
      Location:35 → 223
      PIG-F; GPI biosynthesis protein family Pig-F

    2. XM_015776005.3 → XP_015631491.1  PIGF/3-ketodihydrosphingosine reductase fusion protein isoform X1

      UniProtKB/TrEMBL
      Q0PGJ2
      Conserved Domains (1) summary
      pfam06699
      Location:35 → 223
      PIG-F; GPI biosynthesis protein family Pig-F

    3. XM_015776008.3 → XP_015631494.1  PIGF/3-ketodihydrosphingosine reductase fusion protein isoform X2

      UniProtKB/TrEMBL
      B8AMD4, B9FAW5, Q10SA7
      Conserved Domains (1) summary
      pfam06699
      Location:35 → 203
      PIG-F; GPI biosynthesis protein family Pig-F

    4. XM_015776009.3 → XP_015631495.1  PIGF/3-ketodihydrosphingosine reductase fusion protein isoform X2

      UniProtKB/TrEMBL
      B8AMD4, B9FAW5, Q10SA7
      Conserved Domains (1) summary
      pfam06699
      Location:35 → 203
      PIG-F; GPI biosynthesis protein family Pig-F

    5. XM_015776007.3 → XP_015631493.1  PIGF/3-ketodihydrosphingosine reductase fusion protein isoform X1

      UniProtKB/TrEMBL
      Q0PGJ2
      Conserved Domains (1) summary
      pfam06699
      Location:35 → 223
      PIG-F; GPI biosynthesis protein family Pig-F

    6. XM_066308797.1 → XP_066164894.1  PIGF/3-ketodihydrosphingosine reductase fusion protein isoform X2

      UniProtKB/TrEMBL
      B8AMD4, B9FAW5, Q10SA7
    Nucleotide Protein
    Heading Accession and Version

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