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    LOC4336982 probable gamma-aminobutyrate transaminase 2, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336982, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4336982
    Gene description
    probable gamma-aminobutyrate transaminase 2, mitochondrial
    Locus tag
    OSNPB_040614500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4336982 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (31673793..31682388)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31166107..31174732)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112938738 Neighboring gene uncharacterized LOC107277025 Neighboring gene gamma-aminobutyrate transaminase 1, mitochondrial-like Neighboring gene COP1-interactive protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables adenosylmethionine-8-amino-7-oxononanoate transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biotin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in gamma-aminobutyric acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable gamma-aminobutyrate transaminase 2, mitochondrial
    Names
    LOC_Os04g52440
    OSJNBa0008M17.3
    NP_001406790.1
    XP_015635716.1
    XP_015635717.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419861.1 → NP_001406790.1  probable gamma-aminobutyrate transaminase 2, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      AK100259
      UniProtKB/Swiss-Prot
      A0A0P0WF20, B8AU58, Q01K12, Q7XN12

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      31673793..31682388
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780230.3 → XP_015635716.1  probable gamma-aminobutyrate transaminase 2, mitochondrial isoform X1

      UniProtKB/TrEMBL
      B9FCH0
      Conserved Domains (1) summary
      PLN02760
      Location:2 → 515
      PLN02760; 4-aminobutyrate:pyruvate transaminase

    2. XM_015780231.3 → XP_015635717.1  probable gamma-aminobutyrate transaminase 2, mitochondrial isoform X2

      UniProtKB/TrEMBL
      B9FCH0
      Conserved Domains (2) summary
      PLN02760
      Location:10 → 508
      PLN02760; 4-aminobutyrate:pyruvate transaminase
      COG0160
      Location:76 → 497
      GabT; 4-aminobutyrate aminotransferase or related aminotransferase [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XN12.2 GenPept UniProtKB/Swiss-Prot:Q7XN12

    Gene LinkOut

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