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    LOC4342078 basic leucine zipper 19 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342078, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342078
    Gene description
    basic leucine zipper 19
    Locus tag
    OSNPB_060716800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0541C02.4
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    Genomic context

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    See LOC4342078 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (31321791..31325505, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (30452428..30456214, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357054 Neighboring gene endoplasmin homolog Neighboring gene uncharacterized LOC136356915 Neighboring gene protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    basic leucine zipper 19
    Names
    Os06g0716800
    P0481E08.37
    transcription factor-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      31321791..31325505 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787020.3 → XP_015642506.1  basic leucine zipper 19

      UniProtKB/TrEMBL
      A0A0N7KMR0, A2YH09, Q5Z8P6, Q5Z9N7, Q8SB38
      Conserved Domains (2) summary
      smart00338
      Location:97 → 156
      BRLZ; basic region leucin zipper
      cd14686
      Location:103 → 150
      bZIP; coiled coil [structural motif]

    2. XM_015787019.3 → XP_015642505.1  basic leucine zipper 19

      UniProtKB/TrEMBL
      A0A0N7KMR0, A2YH09, Q5Z8P6, Q5Z9N7, Q8SB38
      Conserved Domains (2) summary
      smart00338
      Location:97 → 156
      BRLZ; basic region leucin zipper
      cd14686
      Location:103 → 150
      bZIP; coiled coil [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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