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    LOC4325355 heat shock 70 kDa protein 15 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325355, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325355
    Gene description
    heat shock 70 kDa protein 15
    Locus tag
    OSNPB_010180800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0666G04.5; OJ1174_D05.17
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    Genomic context

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    See LOC4325355 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (4264380..4270056)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (4253836..4259574)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene DNA mismatch repair protein MSH7 Neighboring gene DDT domain-containing protein DDR4 Neighboring gene 2-oxoglutarate and iron-dependent oxygenase domain-containing protein ICU11 Neighboring gene FRIGIDA-like protein 4a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heat shock 70 kDa protein 15
    Names
    70 kDa heat shock protein
    Os01g0180800
    putative heat shock protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      4264380..4270056
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761062.2 → XP_015616548.1  heat shock 70 kDa protein 15

      UniProtKB/TrEMBL
      A0A0P0UZF7, A0A8J8XXV6, A2WLE4, Q7F6Z0, Q9AQZ5
      Conserved Domains (1) summary
      cd10228
      Location:2 → 381
      HSPA4_like_NDB; Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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