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    LOC4346392 DNA-directed RNA polymerases II, IV and V subunit 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346392, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346392
    Gene description
    DNA-directed RNA polymerases II, IV and V subunit 3
    Locus tag
    OSNPB_090110400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4346392 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (4946768..4953426)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (927068..933801)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g79540 Neighboring gene cyclase-like protein 4 Neighboring gene cyclin-D3-2-like Neighboring gene uncharacterized LOC136351910

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II, core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerases II, IV and V subunit 3
    Names
    Os09g0110400
    P0646B04.12
    putative DNA-directed RNA polymerase II

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      4946768..4953426
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756899.3 → XP_015612385.1  DNA-directed RNA polymerases II, IV and V subunit 3

      UniProtKB/TrEMBL
      A0A0P0XIH3, B8BCX6, B9G242, Q6YX88
      Conserved Domains (1) summary
      cd07031
      Location:14 → 316
      RNAP_II_RPB3; RPB3 subunit of Eukaryotic RNA polymerase II
    Nucleotide Protein
    Heading Accession and Version

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