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    LOC4332013 putative pentatricopeptide repeat-containing protein At1g02420 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332013, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4332013
    Gene description
    putative pentatricopeptide repeat-containing protein At1g02420
    Locus tag
    OSNPB_030208600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 1.2), leaves before flowering (RPKM 1.2) and 6 other tissues See more
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    Genomic context

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    See LOC4332013 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (5717161..5719260)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (5669876..5672071)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein RBL Neighboring gene metal transporter Nramp2-like Neighboring gene putative cyclin-F3-1 Neighboring gene putative cyclin-F3-2 Neighboring gene uncharacterized LOC4332014

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative pentatricopeptide repeat-containing protein At1g02420
    Names
    Os03g0208600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      5717161..5719260
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773700.3 → XP_015629186.1  putative pentatricopeptide repeat-containing protein At1g02420

      UniProtKB/TrEMBL
      A2XDS3, Q0DU43, Q8H058
      Conserved Domains (3) summary
      PLN03218
      Location:190 → 415
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:221 → 245
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:431 → 472
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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