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    LOC4352778 nuclear transcription factor Y subunit A-7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352778, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4352778
    Gene description
    nuclear transcription factor Y subunit A-7
    Locus tag
    OSNPB_120613000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NF-Y22; OsHAP2B
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    Genomic context

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    See LOC4352778 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (26669487..26673394, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (25953306..25957363, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene protein transport protein SEC61 subunit alpha Neighboring gene homeobox-leucine zipper protein HOX33-like Neighboring gene cationic amino acid transporter 1-like Neighboring gene histone-lysine N-methyltransferase ATXR7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner. Lee DK, et al. Plant Sci, 2015 Dec. PMID 26706071
    2. Identification, characterization and interaction of HAP family genes in rice. Thirumurugan T, et al. Mol Genet Genomics, 2008 Mar. PMID 18193457
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transcription factor Y subunit A-7
    Names
    HAP2 subunit of HAP complex
    NF-Y transcription factor 22
    Os12g0613000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      26669487..26673394 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762919.3 → XP_015618405.1  nuclear transcription factor Y subunit A-7 isoform X2

      UniProtKB/TrEMBL
      A0A8J8XZ16, A2ZMP1, A3CJD9, Q0ILY5, Q2QM93
      Conserved Domains (1) summary
      pfam02045
      Location:109 → 164
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    2. XM_066306463.1 → XP_066162560.1  nuclear transcription factor Y subunit A-7 isoform X6

    3. XM_015762918.3 → XP_015618404.1  nuclear transcription factor Y subunit A-7 isoform X1

      UniProtKB/TrEMBL
      Q2QM94
      Conserved Domains (1) summary
      pfam02045
      Location:110 → 165
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    4. XM_015762922.3 → XP_015618408.1  nuclear transcription factor Y subunit A-7 isoform X5

      Conserved Domains (1) summary
      cl02165
      Location:107 → 143
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    5. XM_066306462.1 → XP_066162559.1  nuclear transcription factor Y subunit A-7 isoform X4

    6. XM_066306461.1 → XP_066162558.1  nuclear transcription factor Y subunit A-7 isoform X3

    7. XM_015762921.3 → XP_015618407.1  nuclear transcription factor Y subunit A-7 isoform X3

      Conserved Domains (1) summary
      cl02165
      Location:107 → 143
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
    Nucleotide Protein
    Heading Accession and Version

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