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    LOC4341573 potassium transporter 10-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341573, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4341573
    Gene description
    potassium transporter 10-like
    Locus tag
    OSNPB_060625900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HAK10; OsHAK10
    Expression
    Broad expression in flowers (RPKM 36.5), flower buds (RPKM 30.4) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (26101083..26105952, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25238179..25242691, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357106 Neighboring gene probable glucomannan 4-beta-mannosyltransferase 9 Neighboring gene pentatricopeptide repeat-containing protein At4g16470 Neighboring gene uncharacterized LOC112939414 Neighboring gene uncharacterized LOC136351036

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Inventory and functional characterization of the HAK potassium transporters of rice. Bañuelos MA, et al. Plant Physiol, 2002 Oct. PMID 12376644, Free PMC Article
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables potassium ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    potassium transporter 10
    Names
    LOC_Os06g42030
    OSJNBa0072A21.17
    Os06g0626050
    putative potasium transporter
    putative potassium transporter KUP3p

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421654.1 → NP_001408583.1  potassium transporter 10

      Status: VALIDATED

      Source sequence(s)
      AJ427972, CB664024, CI228916
      UniProtKB/Swiss-Prot
      Q0DAU3, Q67VS5, Q8VXB3, Q8VXB9
      UniProtKB/TrEMBL
      B9FQ05

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      26101083..26105952 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q67VS5.1 GenPept UniProtKB/Swiss-Prot:Q67VS5

    Gene LinkOut

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    Research Materials