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    LOC4345102 probable E3 ubiquitin-protein ligase XBOS35 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345102, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4345102
    Gene description
    probable E3 ubiquitin-protein ligase XBOS35
    Locus tag
    OSNPB_080258200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    XBOS35; OsJ_26639
    Expression
    Broad expression in roots before flowering (RPKM 40.8), milk grains (RPKM 14.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (9684983..9690768, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (9628580..9633815, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4345101 Neighboring gene uncharacterized LOC107275380 Neighboring gene putative disease resistance protein RGA4 Neighboring gene uncharacterized LOC4345103

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase XBOS35
    Names
    Ankyrin repeat domain and RING finger-containing protein XBOS35
    B1015H11.105
    LOC_Os08g15840
    RING-type E3 ubiquitin transferase XBOS35
    XB3 protein homolog 5
    putative ankyrin repeat-rich protein
    receptor-like kinase Xa21-binding protein 3-like
    NP_001409451.1
    NP_001409452.1
    NP_001409453.1
    XP_066168966.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422522.1 → NP_001409451.1  probable E3 ubiquitin-protein ligase XBOS35

      Status: VALIDATED

      Source sequence(s)
      AK067289
      UniProtKB/Swiss-Prot
      A0A0P0XDI3, Q7EZ44
      UniProtKB/TrEMBL
      A2YT41

    2. NM_001422523.1 → NP_001409452.1  probable E3 ubiquitin-protein ligase XBOS35

      Status: VALIDATED

      Source sequence(s)
      AK067289, CI756851
      UniProtKB/Swiss-Prot
      A0A0P0XDI3, Q7EZ44
      UniProtKB/TrEMBL
      A2YT41

    3. NM_001422524.1 → NP_001409453.1  probable E3 ubiquitin-protein ligase XBOS35

      Status: VALIDATED

      Source sequence(s)
      AK067289, AU173137
      UniProtKB/Swiss-Prot
      A0A0P0XDI3, Q7EZ44
      UniProtKB/TrEMBL
      A2YT41

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      9684983..9690768 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066312869.1 → XP_066168966.1  probable E3 ubiquitin-protein ligase XBOS35 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0XDI3, Q7EZ44
      UniProtKB/TrEMBL
      A2YT41
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7EZ44.1 GenPept UniProtKB/Swiss-Prot:Q7EZ44

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