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    LOC4347299 polyadenylate-binding protein RBP47 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347299, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347299
    Gene description
    polyadenylate-binding protein RBP47
    Locus tag
    OSNPB_090462700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 26.6), mature seeds (RPKM 11.5) and 6 other tissues See more
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    Genomic context

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    See LOC4347299 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (21881703..21885920)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (17498912..17503053)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene 2-hydroxyisoflavanone dehydratase Neighboring gene uncharacterized LOC107278958 Neighboring gene patatin-like protein 2 Neighboring gene serine carboxypeptidase 1-like Neighboring gene serine carboxypeptidase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyadenylate-binding protein RBP47; polyadenylate-binding protein RBP47C'
    Names
    OSJNBa0054F02.56
    OSJNBb0019B14.3
    Os09g0462700
    putative nucleic acid binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      21881703..21885920
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757050.3 → XP_015612536.1  polyadenylate-binding protein RBP47 isoform X1

      Conserved Domains (4) summary
      cd12344
      Location:111 → 191
      RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:202 → 281
      RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12346
      Location:304 → 375
      RRM3_NGR1_NAM8_like; RNA recognition motif 3 in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins
      TIGR01661
      Location:121 → 381
      ELAV_HUD_SF; ELAV/HuD family splicing factor

    2. XM_015757051.3 → XP_015612537.1  polyadenylate-binding protein RBP47C' isoform X2

      UniProtKB/TrEMBL
      B8BCR0
      Conserved Domains (4) summary
      cd12344
      Location:69 → 132
      RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:143 → 222
      RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12346
      Location:245 → 316
      RRM3_NGR1_NAM8_like; RNA recognition motif 3 in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins
      TIGR01661
      Location:70 → 322
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    Nucleotide Protein
    Heading Accession and Version

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