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    LOC4343796 eukaryotic translation initiation factor 5A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343796, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4343796
    Gene description
    eukaryotic translation initiation factor 5A
    Locus tag
    OSNPB_070597000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    eIF-5A
    Expression
    Ubiquitous expression in roots after flowering (RPKM 477.3), leaves after flowering (RPKM 471.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (24542390..24545591, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (24317731..24321041, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357453 Neighboring gene probable WRKY transcription factor 3 Neighboring gene probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g74360

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation elongation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of translational elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of translational termination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translational elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    eukaryotic translation initiation factor 5A
    Names
    Os07g0597000
    P0453E05.118
    translation initiation factor 5A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      24542390..24545591 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791466.3 → XP_015646952.1  eukaryotic translation initiation factor 5A

      UniProtKB/TrEMBL
      A0A0P0X8L6, Q84ZK1, Q9LEE4, Q9ZSU2
      Conserved Domains (1) summary
      PLN03107
      Location:2 → 160
      PLN03107; eukaryotic translation initiation factor 5A; Provisional

    2. XM_066312236.1 → XP_066168333.1  eukaryotic translation initiation factor 5A

      UniProtKB/TrEMBL
      A0A0P0X8L6, Q84ZK1, Q9LEE4, Q9ZSU2
    Nucleotide Protein
    Heading Accession and Version

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