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    LOC4341099 protein decapping 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341099, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4341099
    Gene description
    protein decapping 5
    Locus tag
    OSNPB_060496000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 46.6), flower buds (RPKM 45.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (18160518..18167840)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (17311241..17318609)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341097 Neighboring gene protein MIZU-KUSSEI 1 Neighboring gene transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like Neighboring gene uncharacterized LOC136351225

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in P-body assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in stress granule assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein decapping 5
    Names
    B1089G05.24
    Os06g0496000
    alphaSNBP(B)-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      18160518..18167840
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311378.1 → XP_066167475.1  protein decapping 5

      UniProtKB/TrEMBL
      A0A0P0WXB3, B8B2T9, Q651K5
    Nucleotide Protein
    Heading Accession and Version

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