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    LOC4326798 AMSH-like ubiquitin thioesterase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326798, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326798
    Gene description
    AMSH-like ubiquitin thioesterase 3
    Locus tag
    OSNPB_010338200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1088D01.3
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    Genomic context

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    See LOC4326798 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (13339914..13348854)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (13296319..13305267)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene small COPII coat GTPase SAR1A Neighboring gene transcription initiation factor TFIID subunit 13 Neighboring gene uncharacterized LOC4326799 Neighboring gene transfer RNA asparagine (anticodon GUU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables K63-linked deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal-dependent deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein K48-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K63-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AMSH-like ubiquitin thioesterase 3
    Names
    Os01g0338200
    STAM binding protein(associated molecule with the SH3 domain of STAM)-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      13339914..13348854
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766269.3 → XP_015621755.1  AMSH-like ubiquitin thioesterase 3

      UniProtKB/TrEMBL
      A0A0P0V1Y1, B9EW85, Q942M1
      Conserved Domains (2) summary
      cd08066
      Location:343 → 517
      MPN_AMSH_like; Mov34/MPN/PAD-1 family
      pfam08969
      Location:13 → 108
      USP8_dimer; USP8 dimerization domain
    Nucleotide Protein
    Heading Accession and Version

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