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    LOC4330702 NEP1-interacting protein-like 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330702, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330702
    Gene description
    NEP1-interacting protein-like 2
    Locus tag
    OSNPB_020743700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1734_E02.21-1; OJ1734_E02.21-2
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    Genomic context

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    See LOC4330702 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31685899..31688544)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31190747..31193526)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase SIS8 Neighboring gene uncharacterized protein At5g39570 Neighboring gene protein BOBBER 2 Neighboring gene casparian strip membrane protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    NEP1-interacting protein-like 2
    Names
    Os02g0743700
    putative NEP1-interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      31685899..31688544
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767580.3 → XP_015623066.1  NEP1-interacting protein-like 2 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VPG5, Q6Z2U8
      Conserved Domains (1) summary
      cl01978
      Location:24 → 58
      DUF1269; Protein of unknown function (DUF1269)

    2. XM_015767581.2 → XP_015623067.1  NEP1-interacting protein-like 2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VPB9, B8AIF4, Q6Z2U9
      Conserved Domains (2) summary
      cd16454
      Location:175 → 217
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
      pfam06897
      Location:27 → 58
      DUF1269; Protein of unknown function (DUF1269)
    Nucleotide Protein
    Heading Accession and Version

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