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    LOC4327645 DEAD-box ATP-dependent RNA helicase 14-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327645, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4327645
    Gene description
    DEAD-box ATP-dependent RNA helicase 14-like
    Locus tag
    OSNPB_010172200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 28.0), flowers (RPKM 25.4) and 6 other tissues See more
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    Genomic context

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    See LOC4327645 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3722463..3727407, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3713724..3718632, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937923 Neighboring gene dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase Neighboring gene phosphoenolpyruvate/phosphate translocator 3, chloroplastic-like Neighboring gene uncharacterized LOC4327646 Neighboring gene phospholipase D alpha 1-like Neighboring gene peroxidase 25

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dEAD-box ATP-dependent RNA helicase 14
    Names
    ATP-dependent RNA helicase DB10
    DEAD-box ATP-dependent RNA helicase 14
    LOC_Os01g07740
    P0583G08.30-1
    P0583G08.30-2
    putative p68 RNA helicase
    NP_001396153.1
    NP_001396154.1
    NP_001396155.1
    NP_001396156.1
    XP_066163175.1
    XP_066163179.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409224.1 → NP_001396153.1  dEAD-box ATP-dependent RNA helicase 14 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK100326, CI271783, CI271805
      UniProtKB/TrEMBL
      B7EQA6, B8ADH5

    2. NM_001409225.1 → NP_001396154.1  dEAD-box ATP-dependent RNA helicase 14 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK100326, CI124517, CI271783, CI271805
      UniProtKB/TrEMBL
      B8ADH5

    3. NM_001409226.1 → NP_001396155.1  dEAD-box ATP-dependent RNA helicase 14 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AK100326, CI271783, CI271805, CI394086, GQ267545
      UniProtKB/Swiss-Prot
      Q5VQL1, Q5VQL2
      UniProtKB/TrEMBL
      A0A8J8Y3D2, B8ADH5, B9ET41, C6KML5, C6KML6

    4. NM_001409227.1 → NP_001396156.1  dEAD-box ATP-dependent RNA helicase 14 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AK100326, CI124517, CI271783, CI271805, CI350897, GQ267545
      UniProtKB/TrEMBL
      B8ADH5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      3722463..3727407 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307082.1 → XP_066163179.1  dEAD-box ATP-dependent RNA helicase 14 isoform X2

      UniProtKB/TrEMBL
      B8ADH5

    2. XM_066307078.1 → XP_066163175.1  dEAD-box ATP-dependent RNA helicase 14 isoform X1

      UniProtKB/TrEMBL
      B8ADH5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5VQL1.1 GenPept UniProtKB/Swiss-Prot:Q5VQL1

    Gene LinkOut

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