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    LOC4331509 catalase isozyme C [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331509, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331509
    Gene description
    catalase isozyme C
    Locus tag
    OSNPB_030131200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CatC; catalase
    Expression
    Biased expression in roots after flowering (RPKM 530.4), leaves after flowering (RPKM 461.5) and 2 other tissues See more
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    Genomic context

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    See LOC4331509 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (1795588..1798876, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (1787663..1790952, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase PIX13 Neighboring gene protein NLP1-like Neighboring gene ubiquitin domain-containing protein DSK2a Neighboring gene uncharacterized LOC4331511

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Involvement of CAT in the detoxification of HT-induced ROS burst in rice anther and its relation to pollen fertility. Zhao Q, et al. Plant Cell Rep, 2018 May. PMID 29464319
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SOD and CAT were more susceptible to the reactive oxygen species burst in rice anther induced by high temperature exposure.
      Title: Involvement of CAT in the detoxification of HT-induced ROS burst in rice anther and its relation to pollen fertility.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables catalase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hydrogen peroxide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to hydrogen peroxide IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    catalase isozyme C
    Names
    Os03g0131200
    catalase-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      1795588..1798876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774263.3 → XP_015629749.1  catalase isozyme C

      UniProtKB/Swiss-Prot
      B8AME2, Q10S82, Q7XAD9, Q9ZRI9
      UniProtKB/TrEMBL
      Q9ZWH7
      Conserved Domains (1) summary
      PLN02609
      Location:1 → 492
      PLN02609; catalase
    Nucleotide Protein
    Heading Accession and Version

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