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    LOC4351254 xylan O-acetyltransferase 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351254, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4351254
    Gene description
    xylan O-acetyltransferase 3-like
    Locus tag
    OSNPB_120104700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    XOAT3
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 23.9), roots after flowering (RPKM 21.2) and 6 other tissues See more
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    Genomic context

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    See LOC4351254 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (265982..270385)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (242909..247377)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene protein DWARF 53-LIKE-like Neighboring gene fatty acid desaturase DES3 Neighboring gene clathrin heavy chain 2-like Neighboring gene probable calcium-binding protein CML25/26

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Biochemical characterization of rice xylan O-acetyltransferases. Zhong R, et al. Planta, 2018 Jun. PMID 29569182
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    xylan O-acetyltransferase 3-like
    Names
    Os12g0104700
    xylan O-acetyltransferase 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      265982..270385
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765136.3 → XP_015620622.1  xylan O-acetyltransferase 3-like

      UniProtKB/Swiss-Prot
      B9GBE1, Q0IQR9, Q2QYW3
      UniProtKB/TrEMBL
      A2ZH76
      Conserved Domains (2) summary
      pfam13839
      Location:149 → 438
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:95 → 148
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version

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