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    LOC4352613 probable inactive purple acid phosphatase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352613, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4352613
    Gene description
    probable inactive purple acid phosphatase 1
    Locus tag
    OSNPB_120576700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4352613 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (24520899..24524949, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (23810528..23814942, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4352611 Neighboring gene probable inactive purple acid phosphatase 1 Neighboring gene probable inactive purple acid phosphatase 1 Neighboring gene transfer RNA lysine (anticodon CUU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acid phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable inactive purple acid phosphatase 1
    Names
    Os12g0576700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      24520899..24524949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762813.3 → XP_015618299.1  probable inactive purple acid phosphatase 1

      UniProtKB/TrEMBL
      B9GDX2, Q0IMD6, Q2QN73
      Conserved Domains (3) summary
      cd00839
      Location:280 → 591
      MPP_PAPs; purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain
      pfam17808
      Location:44 → 162
      fn3_PAP; Fn3-like domain from Purple Acid Phosphatase
      pfam16656
      Location:166 → 273
      Pur_ac_phosph_N; Purple acid Phosphatase, N-terminal domain

    2. XM_015762811.3 → XP_015618297.1  probable inactive purple acid phosphatase 1

      UniProtKB/TrEMBL
      B9GDX2, Q0IMD6, Q2QN73
      Conserved Domains (3) summary
      cd00839
      Location:280 → 591
      MPP_PAPs; purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain
      pfam17808
      Location:44 → 162
      fn3_PAP; Fn3-like domain from Purple Acid Phosphatase
      pfam16656
      Location:166 → 273
      Pur_ac_phosph_N; Purple acid Phosphatase, N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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