U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4348447 probable histidine kinase 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348447, updated on 16-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4348447
    Gene description
    probable histidine kinase 5
    Locus tag
    OSNPB_100362300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HK5; OHK3; OHK3b; OsHK5; OsCRL3; OsJ_31230
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4348447 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (11785579..11797768, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (11191814..11204013, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269388 Neighboring gene PLAT domain-containing protein 3 Neighboring gene uncharacterized LOC136353525 Neighboring gene probable galacturonosyltransferase 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification and characterization of cytokinin-signalling gene families in rice. Ito Y, et al. Gene, 2006 Nov 1. PMID 16919402
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphorelay sensor kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable histidine kinase 5
    Names
    LOC_Os10g21810
    OSJNBa0073L01.1
    cytokinin receptor histidine kinase
    histidine kinase
    NP_001410863.1
    XP_015614149.1
    XP_015614150.1
    XP_066160532.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423934.1 → NP_001410863.1  probable histidine kinase 5

      Status: VALIDATED

      Source sequence(s)
      AB246778, AK121000, AP014966
      UniProtKB/Swiss-Prot
      A1A697, Q0IY65, Q14U60, Q7G3E3, Q8S6P5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      11785579..11797768 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304435.1 → XP_066160532.1  probable histidine kinase 5 isoform X3

    2. XM_015758663.3 → XP_015614149.1  probable histidine kinase 5 isoform X1

      Conserved Domains (2) summary
      PRK11107
      Location:568 → 1176
      PRK11107; hybrid sensory histidine kinase BarA; Provisional
      pfam03924
      Location:296 → 491
      CHASE; CHASE domain

    3. XM_015758664.3 → XP_015614150.1  probable histidine kinase 5 isoform X2

      Conserved Domains (4) summary
      smart00387
      Location:667 → 832
      HATPase_c; Histidine kinase-like ATPases
      smart00388
      Location:555 → 620
      HisKA; His Kinase A (phosphoacceptor) domain
      cd00156
      Location:1018 → 1153
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
      pfam03924
      Location:302 → 467
      CHASE; CHASE domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1A697.1 GenPept UniProtKB/Swiss-Prot:A1A697

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials