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    LOC4341808 twinkle homolog protein, chloroplastic/mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341808, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341808
    Gene description
    twinkle homolog protein, chloroplastic/mitochondrial
    Locus tag
    OSNPB_060671700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Twinkle
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    Genomic context

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    See LOC4341808 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (28732394..28739985)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (27866741..27874424)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene ent-isokaurene C2/C3-hydroxylase-like Neighboring gene auxin-responsive protein SAUR50 Neighboring gene patellin-4 Neighboring gene tubulin beta-3 chain-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5'-3' DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    twinkle homolog protein, chloroplastic/mitochondrial
    Names
    OSJNBa0032M14.13
    Os06g0671700
    P0485A07.23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      28732394..28739985
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785659.3 → XP_015641145.1  twinkle homolog protein, chloroplastic/mitochondrial

      UniProtKB/TrEMBL
      B8B177, B9FQG0
      Conserved Domains (2) summary
      pfam13662
      Location:289 → 378
      Toprim_4; Toprim domain
      cl21455
      Location:425 → 695
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RNA

    1. XR_001546380.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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