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    LOC4329527 serine/threonine-protein kinase CTR1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329527, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4329527
    Gene description
    serine/threonine-protein kinase CTR1
    Locus tag
    OSNPB_020527600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0475F05.7
    Expression
    Broad expression in roots before flowering (RPKM 15.9), flowers (RPKM 7.3) and 6 other tissues See more
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    Genomic context

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    See LOC4329527 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (19801982..19810027, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (19324232..19332174, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene DNA repair protein RAD5A Neighboring gene uncharacterized protein At4g22758 Neighboring gene heat stress transcription factor A-3-like Neighboring gene PAN domain-containing protein At5g03700 Neighboring gene U1 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development. Wang Q, et al. J Exp Bot, 2013 Nov. PMID 24006427, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein kinase CTR1
    Names
    Os02g0527600
    P0458B05.27
    putative CTR1-like protein kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      19801982..19810027 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770883.3 → XP_015626369.1  serine/threonine-protein kinase CTR1 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VJX9, B8AIY9
      Conserved Domains (3) summary
      cd13999
      Location:518 → 766
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
      pfam07714
      Location:512 → 766
      Pkinase_Tyr; Protein tyrosine kinase
      pfam14381
      Location:170 → 376
      EDR1; Ethylene-responsive protein kinase Le-CTR1

    2. XM_015770882.3 → XP_015626368.1  serine/threonine-protein kinase CTR1 isoform X1

      UniProtKB/TrEMBL
      B8AIY9, Q6H6Q5
      Conserved Domains (3) summary
      cd13999
      Location:520 → 768
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
      pfam07714
      Location:514 → 768
      Pkinase_Tyr; Protein tyrosine kinase
      pfam14381
      Location:170 → 376
      EDR1; Ethylene-responsive protein kinase Le-CTR1

    RNA

    1. XR_010739362.1 RNA Sequence

    2. XR_010739361.1 RNA Sequence

    3. XR_003241054.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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