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    LOC4344513 protein IQ-DOMAIN 17 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344513, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344513
    Gene description
    protein IQ-DOMAIN 17
    Locus tag
    OSNPB_080115200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 2.2), roots before flowering (RPKM 1.8) and 3 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (806043..808117, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (795289..797604, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene endoglucanase 19-like Neighboring gene probable L-gulonolactone oxidase 4 Neighboring gene probable BOI-related E3 ubiquitin-protein ligase 2 Neighboring gene NAC domain-containing protein 43

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein IQ-DOMAIN 17
    Names
    Os08g0115200
    P0427G12.22
    calmodulin-binding protein family-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      806043..808117 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793411.3 → XP_015648897.1  protein IQ-DOMAIN 17

      UniProtKB/TrEMBL
      A0A0N7KP64, Q0J8F0, Q6YXT2
      Conserved Domains (1) summary
      pfam13178
      Location:402 → 501
      DUF4005; Protein of unknown function (DUF4005)
    Nucleotide Protein
    Heading Accession and Version

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